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HI Keval,
For pursuing MBBS course, you need to appear for the NEET exam. The eligibility for NEET is as follows:
Educational Qualification
The aspiring candidates should have passed the 12th class examination, minimum of 50% (General category) and 40% (Reserved category) in the aggregate of Physics, Chemistry and Biology from a recognized board before admission.
Also, Indian citizens, non-resident Indians, overseas citizens of India, a person of Indian origin and foreign nationals are eligible to appear in NEET (UG) 2017 and will also be eligible for 15 per cent all India quota seats. Age limit: The upper age limit of the candidates has been fixed 25 years on the date of conduct of examination in which five-year relaxation has been given to the reserved category candidates.
Age limits:
The upper age limit of the candidates has been fixed 25 years on the date of conduct of examination in which five-year relaxation has been given to the reserved category candidates.
Other Eligibility Conditions
Also, Indian citizens, non-resident Indians, overseas citizens of India, a person of Indian origin and foreign nationals are eligible to appear in NEET (UG) and will also be eligible for 15 per cent all India quota seats.
Number of Attempts
There shall be three attempts available uniformly for all the candidates in NEET examination.
If you satisfy above-mentioned conditions, then you can apply for the course.

I would say Lovely Professional University is best for pursuing B.Tech in Biotechnology. If you re looking for quality education, good placements, exposure, academics then LPU is right place, it has all. I am saying this because one of my known is pursuing same course from LPU and her experience is amazing. She told me faculty members works hard tirelessly in enabling students with the acumen to apply the findings of Bio sciences in the fields of medicine, forensics, nutrition and dietetics for the benefit of the community. LPU School of Bioengineering and Biosciences is equipped with state-of-the-art Bioprocess Engineering and Bioscience labs and believes in imparting knowledge to students through a practical approach to achieve mastery in plant and animal physiology. The course offers specializations in Dairy Technology, Fermentation Technology and Bioinformatics. The curriculum offers prime focus on fundamental and applied aspects of biotechnology. Students can get a foreign degree through international collaborations (2 year in India and 2 years abroad or 2 year in India and 1 year abroad)
In addition to core curricula, course offers subjects like communication and soft skills to enhance personality and employability. She said, specializations may be offered in Dairy Technology or Fermentation Technology or Molecular Biotechnology (subject to minimum number of students and feasibility)
The curriculum has been designed in such a way that it makes it easier for the students to prepare themselves for giant exams like CSIR NET ICMR, ICAR, and GATE. With an experienced faculty of 30+ in the department who arw ready to help the students round the clock, seven days a week, this institute is one of the best options for the young population to opt for biotechnology. The school encourages R & D activities for students to get the benefit. Many students from LPU have successfully collaborated with foreign universities and research institutions. The deptt also inculcates entrepreneurship opportunities to build job providers of the future. Companies like Panacea biotech, Dalmia healthcare, Root anaylsis, Cactus (and the list goes on) visit the campus every year. Also the scope is just not limited to work in the corporate sector in areas like marketing, quality controls or as research associative (for companies like Root analysis and cactus) but also the research areas.

Please mention your rank in VITEEE with marks. I think it's too late for deciding to join VIT, Vellore or Chennai campus because in both the campus admission has been closed for all the branches but for your information I can say that if your rank is good like under 6000 then there will be many options for you in terms of branches including you can get CSE branch also with some specialisation here. Also whatever fee structure you have seen in brochure is just for category 1, not other categories if your rank is low then also you can get CSE branch but fee structure will change for you means fee structure of category in which you are.
You should go for counseling process also which is the first step towards admission. If you have done counseling then you can contact VIT office. You can get VIT contact number on its website. For more information please mention your rank in VITEEE because there is very wide spectrum which will surely depend on your rank.
Try to be in VIT, Vellore if possible otherwise Chennai is also good.